Publications

For a complete list of Yanxiao Zhang's publications, click here.

Below is a list of representative peer-reviewed publications. (*co-first. ^#co-correspondence.)

Single-cell Epigenome Analysis Reveals Age-associated Decay of Heterochromatin Domains in Excitatory Neurons in the Mouse Brain
Yanxiao Zhang*^,#, Maria Luisa Amaral*, Chenxu Zhu, Steven F. Grieco, Xiaomeng Hou, Lin Lin, Justin Buchanan, Liqi Tong, Sebastian Preissl, Xiangmin Xu^#, Bing Ren^#
Cell Research, 2022;doi:10.1038/s41422-022-00719-6
An atlas of dynamic chromatin landscapes in mouse fetal development
David U Gorkin*, Iros Barozzi*, Yuan Zhao*, Yanxiao Zhang*, Hui Huang*, Ah Young Lee, Bin Li, Joshua Chiou, Andre Wildberg, Bo Ding, Bo Zhang, Mengchi Wang, J Seth Strattan, Jean M Davidson, Yunjiang Qiu, Veena Afzal, Jennifer A Akiyama, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Tyler H Garvin, Quan T Pham, Anne N Harrington, Brandon J Mannion, Elizabeth A Lee, Yoko Fukuda-Yuzawa, Yupeng He, Sebastian Preissl, Sora Chee, Jee Yun Han, Brian A Williams, Diane Trout, Henry Amrhein, Hongbo Yang, J Michael Cherry, Wei Wang, Kyle Gaulton, Joseph R Ecker, Yin Shen, Diane E Dickel, Axel Visel^#, Len A Pennacchio^#, Bing Ren^#
Nature, 2020;doi:10.1038/s41586-020-2093-3
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
Yanxiao Zhang*, Ting Li*, Sebastian Preissl*, Maria Luisa Amaral, Jonathan D. Grinstein, Elie N. Farah, Eugin Destici, Yunjiang Qiu, Rong Hu, Ah Young Lee, Sora Chee, Kaiyue Ma, Zhen Ye, Quan Zhu, Hui Huang, Rongxin Fang, Leqian Yu, Juan Carlos Izpisua Belmonte, Jun Wu, Sylvia M. Evans, Neil C. Chi^#, Bing Ren^#
Nature Genetics, 2019;doi:10.1038/s41588-019-0479-7
Genomic binding of PAX8-PPARG fusion protein regulates cancer-related pathways and alters the immune landscape of thyroid cancer
Yanxiao Zhang, Jingcheng Yu, Vladimir Grachtchouk, Tingting Qin, Carey N Lumeng, Maureen A Sartor, Ronald J Koenig
Oncotarget, 2017;doi:10.18632/oncotarget.14050
Subtypes of HPV-positive head and neck cancers are associated with HPV characteristics, copy number alterations, PIK3CA mutation, and pathway signatures
Yanxiao Zhang, Lada A Koneva, Shama Virani, Anna E Arthur, Alisha Virani, Pelle B Hall, Charles D Warden, Thomas E Carey, Douglas B Chepeha, Mark E Prince, Jonathan B McHugh, Gregory T Wolf, Laura S Rozek, Maureen A Sartor
Clinical Cancer Research, 2016;doi:10.1158/1078-0432.CCR-16-0323
Genomic binding and regulation of gene expression by the thyroid carcinoma-associated PAX8-PPARG fusion protein
Yanxiao Zhang, Jingcheng Yu, Chee Lee, Bin Xu, Maureen A Sartor, Ronald J Koenig
Oncotarget, 2015;doi:10.18632/oncotarget.6340
PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data
Yanxiao Zhang*, Yu-Hsuan Lin*, Timothy D Johnson, Laura S Rozek, Maureen A Sartor
Bioinformatics, 2014;doi:10.1093/bioinformatics/btu372